Python hana_ml: Basic Auto ML Classification(AutomaticClassification)
source link: https://blogs.sap.com/2022/09/21/python-hana_ml-basic-auto-ml-classificationautomaticclassification/
Go to the source link to view the article. You can view the picture content, updated content and better typesetting reading experience. If the link is broken, please click the button below to view the snapshot at that time.
I am writing this blog to show basic Auto ML classification training procedures using python package hana_ml. Wtih class AutomaticClassification, you don’t need to consider the both preprocessing and classification algorithms. AutoML finds the best one.
Environment
Environment is as below.
- Python: 3.7.3(Not Google Colaboratory)
- HANA: Cloud Edition 2022.16
Python packages and their versions.
- hana_ml: 2.14.22091801
- pandas: 1.3.0
- scikit-learn: 1.0.2
As for HANA Cloud, I activated scriptserver and created my users. Though I don’t recognize other special configurations, I may miss something since our HANA Cloud was created long time before.
I didn’t use HDI here to make environment simple.
Best Pipeline Report
Firstly let me show you a best pipeline report. The report can be displayed within jupyter or downloaded as html file.
Overview
It consists of upper and lower blocks. Pipeline list is displayed on the upper part. Metrics, Pipelines and Logs are displayed on the lower block.
Metrics
In “Metrics” tab, there are the below metrics. I trained with default target scoring, so all metrics are AUC related. It depends on parameter “scorings”.
- AUC-ID
- ACCURACY-AUC
- F1_SCORE_0-AUC / F1_SCORE_1-AUC
- KAPPA-AUC
- LAYERS-AUC
- MCC-AUC
- PRECISION_0-AUC / PRECISION_1-AUC
- RECALL_0-AUC / RECALL_1-AUC
- SUPPORT_0-AUC / SUPPORT_1-AUC
Pipelines
Pipelines tab screen shows the best pipelines.
There are logs of the pipelines.
Pipeline Progress Status Monitor
Pipeline Progress Status Monitor shows Auto ML progress.
Generation Detail
Execution Logs
Python Script
1. Install Python packages
Install python package hana_ml and scikit-learn.
!pip install hana_ml scikit-learn2. Import modules
Import python package modules.
import json
import pprint
import uuid
from hana_ml.algorithms.pal.partition import train_test_val_split
from hana_ml.algorithms.pal.auto_ml import AutomaticClassification
from hana_ml.dataframe import ConnectionContext, create_dataframe_from_pandas
from hana_ml.model_storage import ModelStorage
from hana_ml.visualizers.automl_progress import PipelineProgressStatusMonitor
from hana_ml.visualizers.automl_report import BestPipelineReport
import pandas as pd
from sklearn.datasets import make_classification3. Connect to HANA Cloud
Connect to HANA Cloud and check its version.
ConnectionContext class is for connection to HANA.
HOST = '<HANA HOST NAME>'
SCHEMA = USER = '<USER NAME>'
PASS = '<PASSWORD>'
conn = ConnectionContext(address=HOST, port=443, user=USER,
password=PASS, schema=SCHEMA)
print(conn.hana_version())4.00.000.00.1660640318 (fa/CE2022.16)4. Create test data
Create test data using scikit-learn.
There are 3 features and 1 target variable.
def make_df():
X, y = make_classification(n_samples=1000,
n_features=3, n_redundant=0)
df = pd.DataFrame(X, columns=['X1', 'X2', 'X3'])
df['CLASS'] = y
return df
df = make_df()
print(df)
df.info()Here is dataframe overview.
X1 X2 X3 CLASS
0 0.964229 1.995667 0.244143 1
1 -1.358062 -0.254956 0.502890 0
2 1.732057 0.261251 -2.214177 1
3 -1.519878 1.023710 -0.262691 0
4 4.020262 1.381454 -1.582143 1
.. ... ... ... ...
995 -0.247950 0.500666 -0.219276 1
996 -1.918810 0.183850 -1.448264 0
997 -0.605083 -0.491902 1.889303 0
998 -0.742692 0.265878 -0.792163 0
999 2.189423 0.742682 -2.075825 1
[1000 rows x 4 columns]
<class 'pandas.core.frame.DataFrame'>
RangeIndex: 1000 entries, 0 to 999
Data columns (total 4 columns):
# Column Non-Null Count Dtype
--- ------ -------------- -----
0 X1 1000 non-null float64
1 X2 1000 non-null float64
2 X3 1000 non-null float64
3 CLASS 1000 non-null int64
dtypes: float64(3), int64(1)
memory usage: 31.4 KB5. define table and upload data
Define HANA Table and upload data using function “create_dataframe_from_pandas”.
The function is very useful, since it automatically define table and upload at the same time. Please check options for further detail.
TRAIN_TABLE = 'PAL_TRAIN'
dfh = create_dataframe_from_pandas(conn, df, TRAIN_TABLE,
schema=SCHEMA,
force=True, # True: truncate and insert
replace=True) # True: Null is replaced by 06. Split data into train and test dataset
Split dataset using function “train_test_val_split”. The function needs key columns, so I added key column using function “add_id”.
train, test, _ = train_test_val_split(dfh.add_id(),
testing_percentage=0.2,
validation_percentage=0)
print(f'Train shape: {train.shape}, Test Shape: {test.shape}')Train shape: [8000, 5], Test Shape: [2000, 5]7. Prepare for Training
Train by using class “AutomaticClassification”. “progress_id” is a key to identify the classification job.
# AutomaticClassification init
progress_id = "automl_{}".format(uuid.uuid1())
auto_c = AutomaticClassification(progress_indicator_id=progress_id)Here, you can use workload class to manage HANA workload.
Before executing training, you have to execute “CREATE WORKLOAD CLASS” SQL like below.
CREATE WORKLOAD CLASS "PAL_AUTOML_WORKLOAD" SET 'PRIORITY' = '3', 'STATEMENT MEMORY LIMIT' = '4' , 'STATEMENT THREAD LIMIT' = '20';Here is python script to use the workload class.
# enable_workload_class
auto_c.enable_workload_class(workload_class_name="PAL_AUTOML_WORKLOAD")You can check called algorithms and their parameters.
>> auto_c.display_config_dict()
Used Operators Category
0 CATPCA Transformer
1 FS_supervised Transformer
2 FS_unsupervised Transformer
3 HGBT_Classifier Classifier
4 MLP_Classifier Classifier
5 M_LOGR_Classifier Classifier
6 NB_Classifier Classifier
7 RDT_Classifier Classifier
8 SVM_Classifier Classifier
9 DT_Classifier Classifier
10 SAMPLING Resampler
11 SMOTE Resampler
12 SMOTETomek Resampler
13 TomekLinks Resampler
------------------------------------------------------------
CATPCA
......
Param Config
0 COMPONENTS_PERCENTAGE [0.1, 0.2, 0.5, 0.7, 1.0]
1 SCALING [1]
2 COMPONENT_TOL [0.0]
3 MAX_ITERATION [1000]
4 CONVERGE_TOL [1e-05]
5 LANCZOS_ITERATION [1000]
6 SVD_CALCULATOR [0]
------------------------------------------------------------
FS_supervised
.............
Param Config
0 FS_METHOD [0, 1, 2, 3, 4, 5, 6, 7, 11, 12, 13]
1 HAS_ID [1]
2 TOP_K_BEST [10]
------------------------------------------------------------
FS_unsupervised
...............
Param Config
0 FS_METHOD [9]
1 HAS_ID [1]
2 TOP_K_BEST [10]
------------------------------------------------------------
HGBT_Classifier
...............
Param Config
0 ITER_NUM [100]
1 MAX_DEPTH {'range': [1, 1, 11]}
2 ETA [0.001, 0.01, 0.1, 0.5, 1.0]
3 NODE_SIZE {'range': [1, 1, 21]}
------------------------------------------------------------
MLP_Classifier
..............
Param Config
0 ACTIVATION [13]
1 OUTPUT_ACTIVATION [13]
2 HIDDEN_LAYER_SIZE [100]
3 FUNCTIONALITY [0]
4 TRAINING_STYLE [0, 1]
5 LEARNING_RATE [0.001, 0.01, 0.1, 0.5, 1.0]
6 MOMENTUM [0.9]
7 NORMALIZATION [0]
8 WEIGHT_INIT [0]
------------------------------------------------------------
M_LOGR_Classifier
.................
Param Config
0 MAX_ITERATION [100]
1 ENET_ALPHA [0.0, 1.0]
2 ENET_LAMBDA [0.0001, 0.001, 0.01, 0.1, 1.0, 5.0, 10.0]
------------------------------------------------------------
NB_Classifier
.............
Param Config
0 LAPLACE [0.001, 0.01, 0.1, 1.0, 10.0, 100.0]
------------------------------------------------------------
RDT_Classifier
..............
Param Config
0 TREES_NUM [20]
1 NODE_SIZE {'range': [1, 1, 21]}
2 CALCULATE_OOB [0]
3 SAMPLE_FRACTION [0.75, 1.0]
------------------------------------------------------------
SVM_Classifier
..............
Param Config
0 TYPE [1]
1 KERNEL_TYPE [0]
2 ERROR_TOL [0.01, 0.1]
3 SCALE_INFO [0, 1]
4 SHRINK [0, 1]
------------------------------------------------------------
DT_Classifier
.............
Param Config
0 ALGORITHM [1, 2, 3]
1 MAX_DEPTH {'range': [1, 1, 11]}
2 MIN_RECORDS_OF_PARENT {'range': [2, 1, 21]}
3 MIN_RECORDS_OF_LEAF {'range': [1, 1, 21]}
------------------------------------------------------------
SAMPLING
........
Param Config
0 SAMPLING_METHOD [0, 1, 2, 3, 4, 5, 6]
1 PERCENTAGE {'range': [0.1, 0.1, 1.0]}
2 INTERVAL {'range': [2, 1, 10]}
------------------------------------------------------------
SMOTE
.....
Param Config
0 K_NEAREST_NEIGHBOURS [1, 3]
1 METHOD [1]
------------------------------------------------------------
SMOTETomek
..........
Param Config
0 K_NEAREST_NEIGHBOURS [1, 3]
1 METHOD [1]
2 SAMPLING_STRATEGY [0, 1, 2, 3]
------------------------------------------------------------
TomekLinks
..........
Param Config
0 SAMPLING_STRATEGY [0, 1, 2, 3]
1 DISTANCE_LEVEL [2]
2 METHOD [1]
------------------------------------------------------------8. Training
It is useful to run pipeline progress status monitor with class PipelineProgressStatusMonitor before training. When I tried the monitor on google colab, it failed. So I used pure jupyter lab environment to run the monitor.
# invoke a PipelineProgressStatusMonitor
progress_status_monitor = PipelineProgressStatusMonitor(
# need to create a connection context different from the one of AutoML
connection_context=ConnectionContext(
address=HOST, port=443, user=USER,
password=PASS),
automatic_obj=auto_c)
progress_status_monitor.start()
# training
try:
auto_c.fit(data=train.set_index('ID'))
except Exception as e:
raise e9. Best Pipeline Report
To show best pipeline report, use BestPipelineReport class. You can download the report with function generate_html. In the below case, the file name is “auto-ml_bestpipelinereport.html”.
BestPipelineReport(auto_c).generate_notebook_iframe()
BestPipelineReport(auto_c).generate_html('auto-ml')10. Predict
With “predict” function, you can get prediction result..
>> res = auto_c.predict(test.deselect(['CLASS']).set_index('ID'))
>> print(res.collect())
ID SCORES
0 4 0
1 7 1
2 50 1
3 53 1
4 54 0
.. ... ...
195 982 1
196 988 1
197 989 1
198 995 1
199 1000 0
[200 rows x 2 columns]11. Model Save and Load
With ModelStorage class, you can save and load model. Be careful the hana_ml version, since hana_ml before version 2.14.22091801 cannot save model contents.
11.1. Save
ms = ModelStorage(conn)
auto_c.name = 'AutoML'
ms.save_model(model=auto_c, if_exists='replace')
display(ms.list_models())
pprint.pprint(json.loads(ms.list_models().at[0, 'JSON']))
{'artifacts': {'library': 'PAL',
'model_tables': ['HANAML_AUTOML_1_MODELS_0',
'HANAML_AUTOML_1_MODELS_1'],
'schema': 'I348221'},
'fit_params': {'categorical_variable': None,
'features': None,
'key': None,
'label': None,
'pipeline': None},
'model_attributes': {'config_dict': None,
'crossover_rate': None,
'early_stop': None,
'elite_number': None,
'fold_num': None,
'generations': None,
'max_eval_time_mins': None,
'max_layer': None,
'min_layer': None,
'mutation_rate': None,
'offspring_size': None,
'population_size': None,
'progress_indicator_id': 'automl_8c0dc2aa-3971-11ed-83d2-ca1493788f86',
'random_seed': None,
'resampling_method': None,
'scorings': None},
'pal_meta': {'_fit_param': [['CONFIG_DICT', '{', 'string'],
['PROGRESS_INDICATOR_ID',
'automl_8c0dc2aa-3971-11ed-83d2-ca1493788f86',
'string'],
['PIPELINE_TYPE', 'classifier', 'string'],
['HAS_ID', 1, 'integer']],
'fit_data_struct': {'CLASS': 'INT',
'ID': 'INT',
'X1': 'DOUBLE',
'X2': 'DOUBLE',
'X3': 'DOUBLE'}}}11.2. Load and predict
>> saved_model = ms.load_model(name='AutoML')
>> df_pred = saved_model.predict(test.deselect(['CLASS']).set_index('ID'))
>> print(df_pred.collect())
ID SCORES
0 4 0
1 7 0
2 50 1
3 53 1
4 54 0
.. ... ...
195 982 1
196 988 1
197 989 1
198 995 0
199 1000 0
[200 rows x 2 columns]12. Close connection
Last but not least, closing connection explicitly is preferable.
conn.close()
Recommend
About Joyk
Aggregate valuable and interesting links.
Joyk means Joy of geeK